Publications

(2023). Beyond sequence similarity: cross-phyla protein annotation by structural prediction and alignment. bioRxiv.

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(2022). ColabFold: making protein folding accessible to all. Nature Methods.

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(2022). Foldseek: fast and accurate protein structure search. bioRxiv.

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(2021). SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts. Bioinformatics.

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(2021). Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics.

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(2021). PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research.

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(2021). Going to extremes - a metagenomic journey into the dark matter of life.. FEMS microbiology letters.

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(2020). Protein Sequence Analysis Using the MPI Bioinformatics Toolkit. Current Protocols in Bioinformatics.

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(2019). MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics.

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(2019). Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. Nature Methods.

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(2018). An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports.

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(2017). Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Research.

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(2013). Cloud Prediction of Protein Structure and Function with PredictProtein for Debian. BioMed Research International.

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